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LaTeX Font Info: Font shape `OMS/ptm/m/n' in size <7> not available (Font) Font shape `OMS/cmsy/m/n' tried instead on input line 128. Package natbib Warning: Citation `psych' on page 1 undefined on input line 130. Package natbib Warning: Citation `R' on page 1 undefined on input line 130. LaTeX Font Info: Try loading font information for OT1+pcr on input line 130. (/usr/local/texlive/2018/texmf-dist/tex/latex/psnfss/ot1pcr.fd File: ot1pcr.fd 2001/06/04 font definitions for OT1/pcr. ) LaTeX Font Info: Font shape `OT1/ptm/bx/n' in size <14.4> not available (Font) Font shape `OT1/ptm/b/n' tried instead on input line 131. \tf@toc=\write6 \openout6 = `scoring.toc'. Package natbib Warning: Citation `R' on page 1 undefined on input line 133. Package natbib Warning: Citation `psych' on page 1 undefined on input line 133. LaTeX Font Info: Font shape `OT1/ptm/bx/n' in size <7.4> not available (Font) Font shape `OT1/ptm/b/n' tried instead on input line 141. LaTeX Font Info: Font shape `OT1/ptm/bx/n' in size <6> not available (Font) Font shape `OT1/ptm/b/n' tried instead on input line 141. Underfull \hbox (badness 10000) in paragraph at lines 149--150 [] [1 {/usr/local/texlive/2018/texmf-var/fonts/map/pdftex/updmap/pdftex.map}] Underfull \hbox (badness 10000) in paragraph at lines 166--167 [] Overfull \hbox (23.21187pt too wide) in paragraph at lines 179--180 \OT1/ptm/m/n/10 this might need to be read.clipboard.csv (for comma sep-a-rated data fields) or read.clipboard.tab [] LaTeX Font Info: Font shape `OT1/ptm/bx/n' in size <10.95> not available (Font) Font shape `OT1/ptm/b/n' tried instead on input line 193. Underfull \hbox (badness 10000) in paragraph at lines 194--195 [] [2] Underfull \hbox (badness 10000) in paragraph at lines 200--202 [] Overfull \hbox (286.0039pt too wide) in paragraph at lines 208--209 \OT1/ptm/m/n/10 sav, rds) from the re-mote server. e.g., to read the file \OT1/ pcr/m/n/10 https://personality-project.org/r/psych/HowTo/scoring.tutorial/small .msq.txt[][][] [] Overfull \hbox (26.67047pt too wide) in paragraph at lines 210--215 [] \OT1/ptm/m/n/10 <<>>= file.name <- "https://personality-project.org/r/psych /HowTo/scoring.tutorial/small.msq.txt" [] LaTeX Font Info: Font shape `OT1/pcr/bx/n' in size <10> not available (Font) Font shape `OT1/pcr/b/n' tried instead on input line 221. Underfull \hbox (badness 10000) in paragraph at lines 229--230 [] [3] Underfull \hbox (badness 10000) in paragraph at lines 253--255 [] ./scoring.Rnw:283: You can't use `macro parameter character #' in horizontal mo de. l.283 my.data <- read.file(fn, filetype="txt") # because the suffix is not a... ? ./scoring.Rnw:284: You can't use `macro parameter character #' in horizontal mo de. l.284 dim(my.data) # same as before ? ./scoring.Rnw:284: Emergency stop. l.284 dim(my.data) # same as before End of file on the terminal! Here is how much of TeX's memory you used: 8095 strings out of 492616 116727 string characters out of 6128982 225467 words of memory out of 5000000 11832 multiletter control sequences out of 15000+600000 52487 words of font info for 114 fonts, out of 8000000 for 9000 1141 hyphenation exceptions out of 8191 37i,6n,32p,815b,396s stack positions out of 5000i,500n,10000p,200000b,80000s ./scoring.Rnw:284: ==> Fatal error occurred, no output PDF file produced!